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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015898218.1_cds_XP_016448428.1_43083
CDS Infomation

[gene=LOC107773535] [db_xref=GeneID:107773535] [protein=vetispiradiene synthase 3-like] [protein_id=XP_016448428.1] [location=join(242491..242607,242697..242961,243049..243424,243520..243738,243816..243957,244043..244288,244377..244673)] [gbkey=CDS]
Sequence

ATGGCAACAATTTCATCATTGAATGGAAATCACAAAGATGGGGTTTTTCGCCCAACAACA
AATTTTTCACCCAGCCTTTGGGGAAATATATTTAGTTATTCTGCATTGAATAATCAGGTG
TCCGAGAAAAATATAGAGGAGATTGAAACTTTGAAAAAAGAAGTGAAGCACATGATAGTG
AGTATTCAAAGTGACACCGCAGAAAAAATACAATTGATTGATACTCTTGAACGCCTTGGT
ATTTCGTATCACTTTGAAGAGGAGATTGAAGATCAAATAAGCAAGTTGTTTAATCTAAAT
GTCATTAATGAAGAATATGACCTATACAATGTTGCGTTATATTTTCGATTGTTTAGGCAA
CATGGCTATCCAATCTCTCCTGATCATTTCAACCAATTCAAGGACAACAATGGAAAATTC
AAGGAAACTTTACTTAAAGATGTAAAGGGTATGCTCAATCTGTATGAAGCAGCACAAGTA
AGGGAACATGGAGATGAAATATTAGAAGAGGCTCTTATCTTCACAAAAGCACATTTGGAG
AAAATAGCACCCAAATTAAGCTCTTCTATTATTAAGAAACAAGTAACACATGCACTCATG
CAATCTCTACATAGAGGCATTCCAAGAGCTGAAGCCCATTTTAACATTTCAATTTATGAA
GAATATGAATCAAGAAATGACAAGTTACTAAGGCTTGCCAAACTAGATTATAATTTGTTG
CAAGTGCTACACAAGAAAGAACTTAGTGAACTCACTCAGTGGTGGAAAGATTTGGATCTT
GCATCTAAGCTTTCATATGTTAGAGACAGAATGGTGGAATGCTTTTTTTGGACGGTAGGG
GTGTATTTTGAACCTCAATATTCTCGTGCTCGAATTATGCTTGCAAAATGCGTAGCTATA
ATTTCAGTAATTGACGACACATATGATTCATTTGGTACTCTTGATGAACTAGAAGTGTTC
ACAGAAGTCGTCGACCGATGGGATGTAAGTGAAATTGATCGACTCCCTACCTATATGAAA
ACAGTATATTCAACTCTTCTCGATCTCTTCAAAGAATACGACATCGAAGTAAAGAAACAA
GATATAAGTTTCAATGGAGTTTATTACGTCAAAGAGGCGATGAAAGAAATCGTTAGGAGT
TACTACATTGAAGCACAATGGTTCATCAAAGGGAAAAGTCCACCATTTGAAGAATACCTA
AGTAATGCACTCATCACTGGAACTTATTACCTACTTGCTCCAGCTTCATTATTGGGCATG
AAATCAGCTTCAAAGGCATCATTCGATTGGATGATGAATAAACCTAAAATTCTTGTGGCT
TCTGCATTAATTGGTCGAGTCATTGATGACGTTGCAACTTACAAGATTGAGAAAGAAAAA
GGACAACTTGTGACGGGAATAGAATGCTATATGAAAGAGCACAATTTAACAGTGGAAGAA
GCAAGTGCACAACTTTCTGAAATGGCTGAAAATGCATGGAAGGATTTGAACAAAGAATGC
ATTAAGCCAACTTCAATGCCAGTTGAAATCTTGAAGCCAATCGTAAATCTAACACGTCTA
ATTGATGTGGTTTACAAGAATAATGAAGATGGATATAGTAATCCAAAGAATAATGTGAAG
TCTGTAATTGAAGCCTTACTCGTTAATCCCATCAACATGTAG

Peptide Sequence

PEP ID

XP_016448428.1
PEP Infomation

PREDICTED: vetispiradiene synthase 3-like [Nicotiana tabacum]
Sequence

MATISSLNGNHKDGVFRPTTNFSPSLWGNIFSYSALNNQVSEKNIEEIETLKKEVKHMIV
SIQSDTAEKIQLIDTLERLGISYHFEEEIEDQISKLFNLNVINEEYDLYNVALYFRLFRQ
HGYPISPDHFNQFKDNNGKFKETLLKDVKGMLNLYEAAQVREHGDEILEEALIFTKAHLE
KIAPKLSSSIIKKQVTHALMQSLHRGIPRAEAHFNISIYEEYESRNDKLLRLAKLDYNLL
QVLHKKELSELTQWWKDLDLASKLSYVRDRMVECFFWTVGVYFEPQYSRARIMLAKCVAI
ISVIDDTYDSFGTLDELEVFTEVVDRWDVSEIDRLPTYMKTVYSTLLDLFKEYDIEVKKQ
DISFNGVYYVKEAMKEIVRSYYIEAQWFIKGKSPPFEEYLSNALITGTYYLLAPASLLGM
KSASKASFDWMMNKPKILVASALIGRVIDDVATYKIEKEKGQLVTGIECYMKEHNLTVEE
ASAQLSEMAENAWKDLNKECIKPTSMPVEILKPIVNLTRLIDVVYKNNEDGYSNPKNNVK
SVIEALLVNPINM

Transcript Sequence

Gene sequence data has not been registered.